PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01308.1.g00210.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 390aa    MW: 44140.6 Da    PI: 6.8067
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01308.1.g00210.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1002.2e-31471372101
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl+k+++++ d++++ ++sw + gnsf+v+d++ fa  +Lp++Fkh+nf+SFvRQLn YgF+k+++ +         weF+
  Zmw_sc01308.1.g00210.1.sm.mk  47 FLTKTFDLVADPAIDGVVSWGRGGNSFIVWDPHVFAAVLLPRFFKHNNFSSFVRQLNNYGFRKIDSGR---------WEFA 118
                                   9***************************************************************9988.........**** PP

                                   ESXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkk 101
                                   ++ F +g+++ll++ikr++
  Zmw_sc01308.1.g00210.1.sm.mk 119 NEGFLRGHRHLLRTIKRRR 137
                                   *****************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.05E-3343136IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.4E-3543136IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.7E-5443136IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.1E-174770IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.2E-2947136IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.1E-178597IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434086110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.1E-1798110IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MDHLPLLGMA TVKKEWPPSS PPEEEVMNAV GAPRPMEGLH EVGPPPFLTK TFDLVADPAI  60
DGVVSWGRGG NSFIVWDPHV FAAVLLPRFF KHNNFSSFVR QLNNYGFRKI DSGRWEFANE  120
GFLRGHRHLL RTIKRRRPPS YLAPSQQQHQ QALGSYLEFG HFGVDDEIER LKRDKNILLA  180
EVAKLRQEQQ SAKADVQAME ERLQRAESKQ VQMMGFLARA MQNPDFFHQL LLAHQHQGKR  240
NELEDAFSKE RRRPIRIISA ATASSCQTTA WQSEEELDSS AVLFRSSCRQ FEELSEPRTS  300
ELENLALSIQ GLGKRKHDEN SQAGGGRSSN QDGETAELTD DFWKELLSEG MRGEGDMSVA  360
EVEERRRPPP GRYVDALAQR LGLLSNSTAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-234513618120Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985605.11e-161PREDICTED: heat stress transcription factor A-2d-like
SwissprotQ8H7Y61e-160HFA2D_ORYSJ; Heat stress transcription factor A-2d
TrEMBLK4AJ431e-161K4AJ43_SETIT; Uncharacterized protein
STRINGSi038907m1e-161(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231